Engaging the broader community in biodiversity research: the concept of the COMBER pilot project for divers in ViBRANT
Summary
journal-article
Christina Pavloudi
Work
European Marine Biological Resource Centre
France
→
PSL Research University: EPHE-UPVD-CNRS, UAR CNRS 3278 Centre de Recherche Insulaire et Observatoire de l’Environnement (CRIOBE)
|Post Doctoral Researcher
France
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The George Washington University
|Post Doctoral Associate
US
→
Hellenic Centre for Marine Research
|Post Doctoral Scientist
Greece
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Education
Ghent University, University of Bremen, Hellenic Centre for Marine Research
Belgium
→
PhD in Marine Sciences
University of Crete
Greece
→
MSc in Environmental Biology – Management of Terrestrial and Marine Resources
Aristoteleio Panepistemio Thessalonikes
Greece
→
BSc in Biology
Publications
ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life
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journal-article
Metagenomics: Tools and Insights for Analyzing Next-Generation Sequencing Data Derived from Biodiversity Studies
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journal-article
A comparison of the degree of implementation of marine biodiversity indicators by European countries in relation to the Marine Strategy Framework Directive (MSFD)
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journal-article
Investigation of the suitability of Remane’s “species minimum” concept in a Mediterranean transitional waters ecosystem
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journal-article
Polytraits: A database on biological traits of marine polychaetes
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journal-article
The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text
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journal-article
Interaction with refuse piles is associated with co-occurrence of core gut microbiota in workers of the ant Aphaenogaster picea
Published by
Access Microbiology
Summary
journal-article
Interaction with refuse piles is associated with co-occurrence of core gut microbiota in workers of the ant Aphaenogaster picea
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preprint
First release of the European marine omics biodiversity observation network (EMO BON) shotgun metagenomics data from water and sediment samples
Published by
Biodiversity Data Journal
Summary
journal-article
Implementing long-term genomic observation in the marine environment: preliminary results from the European Marine Omics Biodiversity Observation Network (EMO BON)
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preprint
First release of the European marine omics biodiversity observation network (EMO BON) shotgun metagenomics data from water and sediment samples
Summary
preprint
Infection with the entomopathogenic nematodes Steinernema alters the Drosophila melanogaster larval microbiome
Published by
PLOS One
Summary
journal-article
Disrupted darkness: the impact of anthropogenic light at night on melatonin secretion of Hermodice carunculata (Polychaeta, Annelida)
Published by
Photochemical & Photobiological Sciences
Summary
journal-article
Microbial diversity in four Mediterranean irciniid sponges
Published by
Biodiversity Data Journal
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journal-article
Is in-situ burning an acceptable mitigation option after a major oil spill? Impact on marine plankton
Published by
Science of The Total Environment
Summary
journal-article
Unveiling Emerging Opportunistic Fish Pathogens in Aquaculture: A Comprehensive Seasonal Study of Microbial Composition in Mediterranean Fish Hatcheries
Published by
Microorganisms
Summary
journal-article
Interaction with refuse piles is associated with co-occurrence of core gut microbiota in workers of the ant Aphaenogaster picea
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preprint
Policy Brief | Life on Shore - Effective Marine and Coastal Restoration for Nature and People
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other
Investigating microbial ecology in extreme habitats
Published by
EMBL-EBI Training
Summary
lecture-speech
Editorial: Marine biodiversity hotspots – challenges and resilience
Published by
Frontiers in Marine Science
Summary
journal-article
Spotting disease disrupts the microbiome of infected purple sea urchins, Strongylocentrotus purpuratus
Published by
BMC Microbiology
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journal-article
PRJEB72186
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data-set
PRJEB72187
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data-set
PRJEB72316
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data-set
PRJEB76541
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data-set
Interaction with refuse piles drives co-occurrence of core gut microbiota in workers of the ant Aphaenogaster picea
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preprint
European marine omics biodiversity observation network: a strategic outline for the implementation of omics approaches in ocean observation
Published by
Frontiers in Marine Science
Summary
journal-article
Draft Genome Sequences of Three Bacterial Species from Aquatic Habitats near Washington, DC
Published by
Microbiology Resource Announcements
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journal-article
ARMS-MBON data on long-term monitoring of hard-bottom communities: COI results from 2018-2020
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data-set
Microbial diversity in four Mediterranean irciniid sponges
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data-set
Phytoplankton community composition in relation to environmental variability in the Urdaibai estuary (SE Bay of Biscay): Microscopy and eDNA metabarcoding
Published by
Marine Environmental Research
Summary
journal-article
Insights on <i>Pinna nobilis</i> population genetic structure in the Aegean and Ionian Sea
Published by
PeerJ
Summary
journal-article
metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data
Published by
GigaScience
Summary
journal-article
Bald sea urchin disease shifts the surface microbiome on purple sea urchins in an aquarium
Published by
Pathogens and Disease
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journal-article
PRJEB48198
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data-set
PRJEB48199
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data-set
PRJEB53213
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data-set
Deciphering the community structure and the functional potential of a hypersaline marsh microbial mat community
Published by
FEMS Microbiology Ecology
Summary
journal-article
Wide-Geographic and Long-Term Analysis of the Role of Pathogens in the Decline of Pinna nobilis to Critically Endangered Species
Published by
Frontiers in Marine Science
Summary
journal-article
Seascape of Soft Bottom Benthic Communities in the Aegean Sea
Published by
The Handbook of Environmental Chemistry
Summary
book-chapter
PRJEB46254
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data-set
Micro-CT for Biological and Biomedical Studies: A Comparison of Imaging Techniques
Published by
Journal of Imaging
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journal-article
The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data
Published by
Metabarcoding and Metagenomics
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journal-article
Toward a Global Public Repository of Community Protocols to Encourage Best Practices in Biomolecular Ocean Observing and Research
Published by
Frontiers in Marine Science
Summary
journal-article
Benthic habitat mapping of Plazh Gradina – Zlatna ribka (Black Sea) and Karpathos and Saria Islands (Mediterranean Sea)
Published by
Biodiversity Data Journal
Summary
journal-article
Benthic habitat mapping of Plazh Gradina – Zlatna ribka (Black Sea) and Karpathos and Saria islands (Mediterranean Sea)
Summary
preprint
Bacteria are everywhere, even in your COI marker gene data!
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other
Benthic communities in three Mediterranean touristic ports: MAPMED project
Published by
Biodiversity Data Journal
Summary
journal-article
Artificial Reef Monitoring Structures (ARMS) providing insights on hard substrate biodiversity and community structure of the Eastern Mediterranean Sea
Published by
ARPHA Conference Abstracts
Summary
journal-article
Bacteria are everywhere, even in your COI data: Τhe art of getting to know the unknown unknowns and shine light on the dark matter!
Published by
ARPHA Conference Abstracts
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journal-article
PEMA v2: addressing metabarcoding bioinformatics analysis challenges
Published by
ARPHA Conference Abstracts
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journal-article
PRJEB37741
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data-set
PRJEB37744
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data-set
PRJEB37751
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data-set
PRJEB37753
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data-set
PRJEB37754
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data-set
PRJEB37755
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data-set
PRJEB37756
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data-set
PRJEB37757
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data-set
PRJEB43864
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data-set
PRJEB49235
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data-set
Genomics Observatory Use-Case: The challenge to standardise image and sequence data to Darwin Core format
Published by
Biodiversity Information Science and Standards
Summary
journal-article
Viral Metagenomic Content Reflects Seawater Ecological Quality in the Coastal Zone
Published by
Viruses
Summary
journal-article
First record of the nudibranch Anteaeolidiella lurana (Ev. Marcus & Er. Marcus, 1967) in Greek waters
Published by
Mediterranean Marine Science
Summary
journal-article
PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes
Published by
GigaScience
Summary
journal-article
PRJEB37740
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data-set
Habitat maps of the Protected Area of northern Karpathos and Saria (GR4210003) (December 2020)
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data-set
PRJEB30023
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data-set
PRJEB31838
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data-set
Comparative study of the organismic assemblages associated with the demosponge Sarcotragus foetidus Schmidt, 1862 in the coasts of Cyprus and Greece
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data-set
PEMA: from the raw .fastq files of 16S rRNA and COI marker genes to the (M)OTU-table, a thorough metabarcoding analysis
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other
The Collaborative Potential of Research Infrastructures in Addressing Global Scientific Questions
Published by
Biodiversity Information Science and Standards
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journal-article
PRJEB33796
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data-set
PRJEB33879
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data-set
Research Infrastructures offer capacity to address scientific questions never attempted before: Are all taxa equal?
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other
Research Infrastructures offer capacity to address scientific questions never attempted before: Are all taxa equal?
Summary
other
Genetic diversity of Nephtys hombergii (Phyllodocida, Polychaeta) associated with environmental factors in a highly fluctuating ecosystem
Published by
Journal of the Marine Biological Association of the United Kingdom
Summary
journal-article
Research Infrastructures offer capacity to address scientific questions never attempted before: Are all taxa equal?
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other
Sediment microbial taxonomic and functional diversity in a natural salinity gradient challenge Remane’s ‘‘species minimum’’ concept
Published by
PeerJ
Summary
journal-article
Diversity and abundance of sulfate‐reducing microorganisms in a Mediterranean lagoonal complex (Amvrakikos Gulf, Ionian Sea) derived from dsrB gene
Published by
Aquatic Microbial Ecology
Summary
journal-article
PRJEB20211
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data-set
PRJEB20585
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data-set
Macrofaunal assemblages associated with the sponge Sarcotragus foetidus Schmidt, 1862 (Porifera: Demospongiae) at the coasts of Cyprus and Greece
Published by
Biodiversity Data Journal
Summary
journal-article
Macrofaunal assemblages associated with the sponge Sarcotragus foetidus Schmidt, 1862 (Porifera: Demospongiae) at the coasts of Cyprus and Greece
Published by
Biodiversity Data Journal
Summary
journal-article
Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab)
Published by
Biodiversity Data Journal
Summary
journal-article
Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab)
Published by
Biodiversity Data Journal
Summary
journal-article
Essence of the patterns of cover and richness of intertidal hard bottom communities: a pan-European study
Published by
Journal of the Marine Biological Association of the United Kingdom
Summary
journal-article
Geographic patterns of biodiversity in European coastal marine benthos
Published by
Journal of the Marine Biological Association of the United Kingdom
Summary
journal-article
Salinity is the major factor influencing the sediment bacterial communities in a Mediterranean lagoonal complex (Amvrakikos Gulf, Ionian Sea)
Published by
Marine Genomics
Summary
journal-article
The role of physical variables in biodiversity patterns of intertidal macroalgae along European coasts
Published by
Journal of the Marine Biological Association of the United Kingdom
Summary
journal-article
Seqenv: linking sequences to environments through text mining
Published by
PeerJ Preprints
Summary
journal-article
Unique COI haplotypes in Hediste diversicolor populations in lagoons adjoining the Ionian Sea
Published by
Aquatic Biology
Summary
journal-article
Seqenv: linking sequences to environments through text mining
Published by
PeerJ
Summary
journal-article
Consistent patterns of spatial variability between NE Atlantic and Mediterranean rocky shores
Published by
Journal of the Marine Biological Association of the United Kingdom
Summary
journal-article
Environmental variability and heavy metal concentrations from five lagoons in the Ionian Sea (Amvrakikos Gulf, W Greece)
Published by
Biodiversity Data Journal
Summary
journal-article
Environmental variability and heavy metal concentrations from five lagoons in the Ionian Sea (Amvrakikos Gulf, W Greece)
Published by
Biodiversity Data Journal
Summary
journal-article
PRJEB3370
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data-set
Resistance of polychaete species and trait patterns to simulated species loss in coastal lagoons
Published by
Journal of Sea Research
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journal-article
Mesocosms analysis from water samples of the Mediterranean Sea during the MicroB3 Summer School in May 2014
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data-set
Flow cytometry analysis from water samples of the Mediterranean Sea during the MicroB3 Summer School in May 2014
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data-set
CTD measurements from the Mediterranean Sea during the MicroB3 Summer School in May 2014
Summary
data-set