Colin Smith

About

I am a passionate advocate for making the most of personal genome sequence information to help guide personal healthcare and effective prescribing and this remains my current focus. An experienced professor with a demonstrated long history of working in the higher education industry as a lecturer and research leader. Skilled in genomics, bioinformatics, life sciences and public speaking. Strong education, with a PhD focused on molecular genetics of Streptomyces bacteria from the John Innes Centre, Norwich, UK (registered for PhD with University of East Anglia, UK) and a first degree in microbiology from the University of Bristol, UK. I was responsible for delivering Streptomyces genomics resources to UK and European scientists through grants from the Biotechnology and Biological Sciences Research Council (UK) and the European Commission. Elected Fellow of Royal Society of Biology, UK (2017). I was the lead organiser of a Royal Society Theo Murphy International Scientific Meeting in 2018 ‘Changing views of translation: from ribosome profiling to high resolution imaging of single molecules in vivo’, bringing together leading scientists from across the world. I have played a lead role in several interdisciplinary research programmes at the universities of Manchester (formerly UMIST), Surrey and Brighton, UK. I established a biotech start-up company, RecombinoGen Ltd, in the 2000s with several of my former Manchester graduate students, adopting a novel strategy to develop new antibiotics through genetic hyper-recombination. I have also worked with GlaxoSmithKline, applying advanced genomic analysis approaches to further understanding some of their antibiotic production strains. I was the first person to publicly donate his own whole genome sequence under 'open consent', through the Personal Genome Project UK initiative. I have retired from my full-time university post, but continue to contribute to academic life through visiting professor appointments at King's College London, UK, and the University of Surrey, UK, in the areas of nutritional genomics and SARS-CoV-2/Covid-19 genomics. In my capacity as a genomics consultant I am presently focussing on facilitating public involvement in harnessing personal genome sequence data to guide healthcare and wellbeing decisions. I have real-world personal experience of the general hype surrounding genomics and its potential capacity to transform medicine. On the ground I can see that there is so much that needs to be done to address the gulf in understanding between clinical practice, the genomics data providers and members of the public. I think there is very little connection between the different stakeholders and so much inertia in bringing genomics into clinical practice and health screening, from the clinicians and the public. I am hoping to play a part in bridging this gulf.

Work

King's College London
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Visiting Professor

United Kingdom of Great Britain and Northern Ireland

Private
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Genomics consulting

United Kingdom of Great Britain and Northern Ireland

University of Brighton
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Retired

United Kingdom of Great Britain and Northern Ireland

University of Brighton
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Professor of Functional Genomics

United Kingdom of Great Britain and Northern Ireland

University of Surrey
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Professor of Functional Genomics

United Kingdom of Great Britain and Northern Ireland

The University of Manchester
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Lecturer, Molecular Genetics

United Kingdom of Great Britain and Northern Ireland

University of Bristol
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Postdoctoral Research Associate

United Kingdom of Great Britain and Northern Ireland

John Innes Centre
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Research Assistant

United Kingdom of Great Britain and Northern Ireland

Education

John Innes Centre
United Kingdom of Great Britain and Northern Ireland

PhD

University of Bristol
United Kingdom of Great Britain and Northern Ireland

B.Sc

Publications

Vitamins D2 and D3 have overlapping but different effects on human gene expression revealed through analysis of blood transcriptomes in a randomised double-blind placebo-controlled food-fortification trial

Summary

preprint

Global analysis of the cold-shock response in the model antibiotic producing actinomycete, Streptomyces coelicolor A3(2)

Summary

preprint

Elucidation of Focal Adhesion Kinase as a Modulator of Migration and Invasion and as a Potential Therapeutic Target in Chronic Lymphocytic Leukemia

Published by

Cancers

Summary

journal-article

Elucidation of Focal Adhesion Kinase as a Modulator of Migration and Invasion and as a Potential Therapeutic Target in Chronic Lymphocytic Leukemia

Published by

Cancers

Summary

journal-article

Elucidation of Focal Adhesion Kinase as a Modulator of Migration and Invasion and as a Potential Therapeutic Target in Chronic Lymphocytic Leukemia

Published by

cancers

Summary

journal-article

Vitamins D2 and D3 Have Overlapping But Different Effects on the Human Immune System Revealed Through Analysis of the Blood Transcriptome

Published by

Frontiers in Immunology

Summary

journal-article

Vitamins D2 and D3 Have Overlapping But Different Effects on the Human Immune System Revealed Through Analysis of the Blood Transcriptome

Published by

Frontiers in Immunology

Summary

journal-article

The RNA binding proteins ZFP36L1 and ZFP36L2 modulate transcriptional and post-transcriptional genome-wide effects of glucocorticoids

Summary

preprint

UK Nutrition Research Partnership ‘Hot Topic’ workshop

Published by

Nutrition Bulletin

Summary

journal-article

Chemotranscriptomic Profiling Defines Drug-Specific Signatures of the Glycopeptide Antibiotics Dalbavancin, Vancomycin and Chlorobiphenyl-Vancomycin in a VanB-Type-Resistant Streptomycete

Published by

Frontiers in Microbiology

Summary

journal-article

Vitamins D2 and D3 have overlapping but different effects on human gene expression revealed through analysis of blood transcriptomes in a randomised double-blind placebo-controlled food-fortification trial

Published by

medrxiv

Summary

preprint

Vitamin D and SARS-CoV-2 virus/COVID-19 disease

Published by

BMJ Nutrition, Prevention & Health

Summary

journal-article

Vitamins D3 and D2 have marked but different global effects on gene expression in a rat oligodendrocyte precursor cell line

Published by

Molecular Medicine

Summary

journal-article

Vitamins D3 and D2 have marked but different global effects on gene expression in a rat oligodendrocyte precursor cell line

Published by

Molecular Medicine

Summary

journal-article

Genome-wide analysis of the role of the antibiotic biosynthesis regulator AbsA2 in Streptomyces coelicolor A3(2)

Published by

PLoS ONE

Summary

journal-article

Vitamins D3 and D2 have marked but different global effects on gene expression in a rat oligodendrocyte precursor cell line

Summary

other

Vitamins D3 and D2 have marked but different global effects on gene expression in a rat oligodendrocyte precursor cell line

Summary

other

Stress hormone-mediated acceleration of breast cancer metastasis is halted by inhibition of nitric oxide synthase

Published by

Cancer Letters

Summary

journal-article

Genome-wide analysis of the role of the antibiotic biosynthesis regulator AbsA2 in Streptomyces coelicolor A3(2)

Published by

PLOS ONE

Summary

journal-article

Genome-wide analysis of the role of the antibiotic biosynthesis regulator AbsA2 in Streptomyces coelicolor A3(2)

Published by

PLOS ONE

Summary

journal-article

Genome-wide analysis of the role of the antibiotic biosynthesis regulator AbsA2 in Streptomyces coelicolor A3(2)

Summary

other

Personal Genome Project UK (PGP-UK)

Published by

BMC Medical Genomics

Summary

journal-article

Translational control plays an important role in the adaptive heat-shock response of Streptomyces coelicolor

Published by

Nucleic Acids Research

Summary

journal-article

Translational control plays an important role in the adaptive heat-shock response of Streptomyces coelicolor

Summary

other

Daily supplementation with 15 μg vitamin D2 compared with vitamin D3 to increase wintertime 25-hydroxyvitamin D status in healthy South Asian and white European women: a 12-wk randomized, placebo-controlled food-fortification trial

Published by

The American Journal of Clinical Nutrition

Summary

journal-article

Daily supplementation with 15 μg vitamin D2 compared with vitamin D3 to increase wintertime 25-hydroxyvitamin D status in healthy South Asian and white European women

Published by

American Journal of Clinical Nutrition

Summary

journal-article

Translational control plays an important role in the adaptive heat-shock response of Streptomyces coelicolor

Summary

other

OsdR of Streptomyces coelicolor and the Dormancy Regulator DevR of Mycobacterium tuberculosis Control Overlapping Regulons

Published by

mSystems

Summary

journal-article

The dynamic transcriptional and translational landscape of the model antibiotic producer Streptomyces coelicolor A3(2)

Published by

Nature Communications

Summary

journal-article

The D2-D3 Study: a randomised, double-blind, placebo-controlled food-fortification trial in women, comparing the efficacy of 15ug/d vitamin D2 vs vitamin D3 in raising serum 25OHD levels

Published by

Proceedings of the Nutrition Society, Summer Meeting, Carbohydrates in health: friends or foes, 15/04/15

Summary

conference-output

Genome-Wide Analysis of In Vivo Binding of the Master Regulator DasR in Streptomyces coelicolor Identifies Novel Non-Canonical Targets

Published by

PLoS ONE

Summary

journal-article

The D2-D3 Study: comparing the efficacy of 15㎍/d vitamin D2 vs. D3 in raising vitamin D status in both South Asian and Caucasian women, and the ethical implications of placebo treatment

Published by

Proceedings of the nutrition society (2015), Carbohydrates in health: friends or foes, 15/04/15

Summary

conference-output

Exploiting human and mouse transcriptomic data

Published by

Bioessays

Summary

journal-article

Mistimed sleep disrupts circadian regulation of the human transcriptome

Published by

Proceedings of the National Academy of Sciences

Summary

journal-article

A comparison of key aspects of gene regulation in Streptomyces coelicolor and Escherichia coli using nucleotide‐resolution transcription maps produced in parallel by global and differential RNA sequencing

Published by

Molecular Microbiology

Summary

journal-article

Deciphering the Regulon of Streptomyces coelicolor AbrC3, a Positive Response Regulator of Antibiotic Production

Published by

Applied and Environmental Microbiology

Summary

journal-article

A terD Domain-Encoding Gene (SCO2368) Is Involved in Calcium Homeostasis and Participates in Calcium Regulation of a DosR-Like Regulon in Streptomyces coelicolor

Published by

Journal of Bacteriology

Summary

journal-article

Effects of insufficient sleep on circadian rhythmicity and expression amplitude of the human blood transcriptome

Published by

Proceedings of the National Academy of Sciences of the United States of America

Summary

journal-article

Comparison of vitamin D2 and vitamin D3 supplementation in raising serum 25-hydroxyvitamin D status

Published by

American Journal of Clinical Nutrition

Summary

journal-article

A bacterial hormone (the SCB1) directly controls the expression of a pathway-specific regulatory gene in the cryptic type I polyketide biosynthetic gene cluster of Streptomyces coelicolor

Published by

Molecular Microbiology

Summary

journal-article