My work is multidisciplinary and focuses on the quantitative epidemiology and evolutionary dynamics of zoonotic diseases under the One Health umbrella. In particular, my research focuses on developing quantitative approaches to understand the ecology and evolution of infectious diseases at the wildlife, livestock and human interface and across different environments. I am an Assistant Professor in the School of Animal & Comparative Biomedical Sciences at the University of Arizona, a Scialog Fellow within the emphasis of ‘Mitigating Zoonotic Threats’ at the Research Corporation for Science Advancement, and I serve as the Program Coordinator of the Zoonotic Disease Subsection of the International Union Against Tuberculosis and Lung Health.
I earned a B.Sc and a M.Sc in Computer Science from the University of Porto, and a Ph.D in Biology from the University of Lisbon, under the PhD Program in Computational Biology (collaboration between the Gulbenkian Institute of Science and Princeton University). I did postdoctoral work in veterinary epidemiology and data science at the Universities of Glasgow and Edinburgh, and I was an Assistant Professor at the University of Georgia jointly appointed in the Department of Infectious Diseases in the College of Veterinary Medicine and in the Institute of Bioinformatics.
Work
University of Arizona
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Assistant Professor
US
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Publications
Evaluation of Mycobacterial Load Assay for rapid molecular identification of Mycobacterium bovis in bovine tissues
preprint
Canine distemper virus phylogenetic structure and ecological correlates of infection in mesocarnivores across anthropogenic land use gradients
Microbiology Spectrum
journal-article
Assessing the potential role of deer in the dissemination of Mycobacterium bovis infection to cattle in Northern Ireland
Infection, Genetics and Evolution
journal-article
Phylogenetic analysis of Mycobacterium bovis reveals animal and zoonotic tuberculosis spread between Morocco and European countries
PLOS Neglected Tropical Diseases
journal-article
Leptospira transcriptome sequencing using long-read technology reveals unannotated transcripts and potential polyadenylation of RNA molecules
Microbiology Spectrum
journal-article
The Many Hosts of Mycobacteria 9 (MHM9): A conference report
Tuberculosis
journal-article
The devil you know and the devil you don’t: current status and challenges of bovine tuberculosis eradication in the United States
Irish Veterinary Journal
journal-article
Molecular epidemiology and transmission dynamics of multi-drug resistant tuberculosis strains using whole genome sequencing in the Amhara region, Ethiopia
BMC Genomics
journal-article
The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection
PLOS ONE
journal-article
The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection
PLOS ONE
journal-article
Leptospira enrichment culture followed by ONT metagenomic sequencing allows better detection of Leptospira presence and diversity in water and soil samples
PLOS Neglected Tropical Diseases
journal-article
Selective sweep sites and SNP dense regions differentiate Mycobacterium bovis isolates across scales
Whole Genome Sequencing Refines Knowledge on the Population Structure of Mycobacterium bovis from a Multi-Host Tuberculosis System
Microorganisms
journal-article
Genomic epidemiology ofMycobacterium bovisinfection in sympatric badger and cattle populations in Northern Ireland
preprint
The Many Hosts of Mycobacteria 8 (MHM8): A conference report
Tuberculosis
journal-article
Analysing livestock network data for infectious disease control: an argument for routine data collection in emerging economies
Philosophical Transactions of the Royal Society B: Biological Sciences
journal-article
Disease management at the wildlife‐livestock interface: Using whole‐genome sequencing to study the role of elk in Mycobacterium bovis transmission in Michigan, USA
Molecular Ecology
journal-article
Identifying genotype specific elevated-risk areas and associated herd risk factors for bovine tuberculosis spread in British cattle.
Epidemics
journal-article
Risk-based strategies for surveillance of tuberculosis infection in cattle for low-risk areas in England and Scotland
Epidemiology and Infection
journal-article
Updated projections for risk-based surveillance for bovine tuberculosis for low risk areas in England and Wales
Department for Environment, Food and Rural Affairs
report
Broadwick: a framework for computational epidemiology
BMC Bioinformatics
journal-article
The development of quantitative risk-based strategies for bovine Tuberculosis in England and Wales
Department for Environment, Food and Rural Affairs
report
Many-core on the Grid: From exploration to production
Journal of Physics: Conference Series
journal-article
Mechanistic analysis of the search behaviour of Caenorhabditis elegans
Journal of The Royal Society Interface
journal-article
Searching without information: A quantitative analysis of Caenorhabditis elegans locomotion
dissertation-thesis
Cryptographic Security of Individual Instances
Information Theoretic Security
other
MiKO- Mikado Koncurrent Objects
Foundations of Global Computing,
conference-paper
Segurança absoluta em sistemas de cifra de chave simétrica