Marlene Oeffinger

Work

Montreal Clinical Research Institute
|

Associate Research Professor

Canada

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Publications

Protocol for the purification and analysis of nuclear UFMylated proteins

Published by

STAR Protocols

Summary

journal-article

Protein UFMylation regulates early events of ribosomal DNA double-stranded break response

Published by

bioRxiv

Summary

other

Protein UFMylation regulates early events during ribosomal DNA-damage response

Published by

Cell Reports

Summary

journal-article

Protein UFMylation regulates early events of ribosomal DNA double-stranded break response

Summary

preprint

The Importance of Being RNA-est: considering RNA-mediated ribosome plasticity

Published by

RNA Biology

Summary

journal-article

The Importance of Being RNA-est: considering RNA-mediated ribosome plasticity

Published by

RNA Biology

Summary

journal-article

Differential affinity purification and mass spectrometry analysis of two nuclear pore complex isoforms in yeast S. cerevisiae

Published by

STAR Protocols

Summary

journal-article

Special focus on the ribosome life cycle

Published by

RNA Biology

Summary

journal-article

Differential affinity purification and mass spectrometry analysis of two nuclear pore complex isoforms in yeast S. cerevisiae

Published by

STAR Protocols

Summary

journal-article

Miniature RNAs are embedded in an exceptionally protein-rich mitoribosome via an elaborate assembly pathway

Published by

Nucleic Acids Research

Summary

journal-article

Miniature RNAs are embedded in an exceptionally protein-rich mitoribosome via an elaborate assembly pathway

Published by

Nucleic Acids Research

Summary

journal-article

A special issue dedicated to the memory of Jonathan R. Warner (1936-2019), a pioneer of ribosome biology

Published by

RNA Biology

Summary

journal-article

Adaptive partitioning of a gene locus to the nuclear envelope in Saccharomyces cerevisiae is driven by polymer-polymer phase separation

Published by

Nature Communications

Summary

journal-article

Publisher Correction: Adaptive partitioning of a gene locus to the nuclear envelope in Saccharomyces cerevisiae is driven by polymer-polymer phase separation (Nature Communications, (2023), 14, 1, (1135), 10.1038/s41467-023-36391-6)

Published by

Nature Communications

Summary

journal-article

Nuclear mRNA metabolism drives selective basket assembly on a subset of nuclear pore complexes in budding yeast

Published by

Molecular Cell

Summary

journal-article

Nuclear mRNA metabolism drives selective basket assembly on a subset of nuclear pore complexes in budding yeast

Published by

Molecular Cell

Summary

journal-article

Erratum: Author Correction: GFI1 tethers the NuRD complex to open and transcriptionally active chromatin in myeloid progenitors (Communications biology (2021) 4 1 (1356))

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Communications biology

Summary

journal-article

Identification and Characterization of the Interaction Between the Methyl-7-Guanosine Cap Maturation Enzyme RNMT and the Cap-Binding Protein eIF4E

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Journal of Molecular Biology

Summary

journal-article

RbgA ensures the correct timing in the maturation of the 50S subunits functional sites

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Nucleic Acids Research

Summary

journal-article

Single-Step Affinity Purification (ssAP) and Mass Spectrometry of Macromolecular Complexes in the Yeast S. cerevisiae

Published by

Methods in Molecular Biology

Summary

book-chapter

Targeted Cross-Linking Mass Spectrometry on Single-Step Affinity Purified Molecular Complexes in the Yeast Saccharomyces cerevisiae

Published by

Methods in Molecular Biology

Summary

book-chapter

Nuclear mRNA metabolism drives selective basket assembly on a subset of nuclear pores in budding yeast

Summary

other

Nuclear mRNA metabolism drives selective basket assembly on a subset of nuclear pores in budding yeast

Published by

bioRxiv

Summary

other

Choosing the right exit: How functional plasticity of the nuclear pore drives selective and efficient mRNA export

Published by

WIREs RNA

Summary

journal-article

Choosing the right exit: How functional plasticity of the nuclear pore drives selective and efficient mRNA export

Published by

Wiley Interdisciplinary Reviews: RNA

Summary

journal-article

Insights into synthesis and function of KsgA/Dim1-dependent rRNA modifications in archaea

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Nucleic Acids Research

Summary

journal-article

Insights into synthesis and function of KsgA/Dim1-dependent rRNA modifications in archaea

Published by

Nucleic Acids Research

Summary

journal-article

GFI1 tethers the NuRD complex to open and transcriptionally active chromatin in myeloid progenitors

Published by

Communications Biology

Summary

journal-article

GFI1 tethers the NuRD complex to open and transcriptionally active chromatin in myeloid progenitors

Published by

bioRxiv

Summary

other

Altered rRNA processing disrupts nuclear RNA homeostasis via competition for the poly(A)-binding protein Nab2

Published by

Nucleic Acids Research

Summary

journal-article

It's Not the Destination, It's the Journey: Heterogeneity in mRNA Export Mechanisms

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Advances in Experimental Medicine and Biology

Summary

journal-article

It’s Not the Destination, It’s the Journey: Heterogeneity in mRNA Export Mechanisms

Published by

Advances in Experimental Medicine and Biology

Summary

book-chapter

Live-Cell Imaging of mRNP-NPC Interactions in Budding Yeast

Published by

Methods in Molecular Biology

Summary

journal-article

Live-Cell Imaging of mRNP–NPC Interactions in Budding Yeast

Published by

Methods in Molecular Biology

Summary

book-chapter

Preface

Published by

Advances in Experimental Medicine and Biology

Summary

book

Structural studies of the eIF4E-VPg complex reveal a direct competition for capped RNA: Implications for translation

Published by

Proceedings of the National Academy of Sciences

Summary

journal-article

Structural studies of the eIF4E–VPg complex reveal a direct competition for capped RNA: Implications for translation

Published by

Proceedings of the National Academy of Sciences of the United States of America

Summary

journal-article

The Biology of mRNA: Structure and Function Preface

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Advances in Experimental Medicine and Biology

Summary

journal-article

Senescence-associated ribosome biogenesis defects contributes to cell cycle arrest through the Rb pathway

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Nature Cell Biology

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journal-article

Senescence-associated ribosome biogenesis defects contributes to cell cycle arrest through the Rb pathway

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Nature Cell Biology

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journal-article

Stabilization of poly(A)-RNA species by multiple initiating events leads to improper RNA processing and a generalized disruption in nuclear homeostasis

Published by

Molecular Biology of the Cell

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journal-article

The RNA chaperone La promotes pre-TRNA maturation via indiscriminate binding of both native and misfolded targets

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Nucleic Acids Research

Summary

journal-article

DDX54 regulates transcriptome dynamics during DNA damage response

Published by

Genome Research

Summary

journal-article

DDX54 regulates transcriptome dynamics during DNA damage response

Published by

Genome Research

Summary

journal-article

High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast

Published by

Nature Communications

Summary

journal-article

High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast

Published by

Nature Communications

Summary

journal-article

Nol12 is a multifunctional RNA binding protein at the nexus of RNA and DNA metabolism

Published by

Nucleic Acids Research

Summary

journal-article

Nol12 is a multifunctional RNA binding protein at the nexus of RNA and DNA metabolism

Published by

Nucleic Acids Research

Summary

journal-article

The RNA chaperone La promotes pre-TRNA maturation via indiscriminate binding of both native and misfolded targets

Published by

Nucleic Acids Research

Summary

journal-article

The sole LSm complex in Cyanidioschyzon merolae associates with pre-mRNA splicing and mRNA degradation factors

Published by

RNA

Summary

journal-article

The sole LSm complex in Cyanidioschyzon merolae associates with pre-mRNA splicing and mRNA degradation factors

Published by

RNA

Summary

journal-article

The sole LSm complex in Cyanidioschyzon merolae associates with pre-mRNA splicing and mRNA degradation factors

Published by

RNA

Summary

journal-article

Imaging single mRNAs to study dynamics of mRNA export in the yeast Saccharomyces cerevisiae

Published by

Methods

Summary

journal-article

Imaging single mRNAs to study dynamics of mRNA export in the yeast Saccharomyces cerevisiae

Published by

Methods

Summary

journal-article

Moulding the ribosome

Published by

Nature

Summary

journal-article

Structural biology: Moulding the ribosome

Published by

Nature

Summary

journal-article

Nucleolin and nucleophosmin: nucleolar proteins with multiple functions in DNA repair

Published by

Biochemistry and Cell Biology

Summary

journal-article

Nucleolin and nucleophosmin: Nucleolar proteins with multiple functions in DNA repair<sup>1</sup>

Published by

Biochemistry and Cell Biology

Summary

journal-article

Single-step affinity purification (ssAP) and mass spectrometry of macromolecular complexes in the Yeast S. cerevisiae

Published by

Methods in Molecular Biology

Summary

book-chapter

Targeted cross-linking-mass spectrometry determines vicinal interactomes within heterogeneous RNP complexes

Published by

Nucleic Acids Research

Summary

journal-article

Targeted cross-linking-mass spectrometry determines vicinal interactomes within heterogeneous RNP complexes

Published by

Nucleic Acids Research

Summary

journal-article

Emerging properties of nuclear RNP biogenesis and export

Published by

Current Opinion in Cell Biology

Summary

journal-article

Emerging properties of nuclear RNP biogenesis and export

Published by

Current Opinion in Cell Biology

Summary

journal-article

The nuclear basket mediates perinuclear mRNA scanning in budding yeast

Published by

The Journal of Cell Biology

Summary

journal-article

The nuclear basket mediates perinuclear mRNA scanning in budding yeast

Published by

Journal of Cell Biology

Summary

journal-article

A robust pipeline for rapid production of versatile nanobody repertoires

Published by

Nature Methods

Summary

journal-article

A robust pipeline for rapid production of versatile nanobody repertoires

Published by

Nature Methods

Summary

journal-article

Sumoylation of the THO complex regulates the biogenesis of a subset of mRNPs

Published by

Nucleic Acids Research

Summary

journal-article

To the pore and through the pore: A story of mRNA export kinetics

Published by

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

Summary

journal-article

To the pore and through the pore: A story of mRNA export kinetics

Published by

Biochimica et Biophysica Acta - Gene Regulatory Mechanisms

Summary

journal-article

Two steps forward-one step back: Advances in affinity purification mass spectrometry of macromolecular complexes

Published by

Proteomics

Summary

journal-article

Joining the interface: a site for Nmd3 association on 60S ribosome subunits

Published by

The Journal of Cell Biology

Summary

journal-article

Joining the interface: A site for Nmd3 association on 60S ribosome subunits

Published by

Journal of Cell Biology

Summary

journal-article

Rrp17p Is a Eukaryotic Exonuclease Required for 5 ' End Processing of Pre-60S Ribosomal RNA

Published by

Molecular Cell

Summary

journal-article

Rrp17p Is a Eukaryotic Exonuclease Required for 5′ End Processing of Pre-60S Ribosomal RNA

Published by

Molecular Cell

Summary

journal-article

Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes

Published by

Genes & Development

Summary

journal-article

Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes

Published by

Genes and Development

Summary

journal-article

Comprehensive analysis of diverse ribonucleoprotein complexes

Published by

Nature Methods

Summary

journal-article

Comprehensive analysis of diverse ribonucleoprotein complexes

Published by

Nature Methods

Summary

journal-article

Yeast Rrp14p is required for ribosomal subunit synthesis and for correct positioning of the mitotic spindle during mitosis

Published by

Nucleic Acids Research

Summary

journal-article

Yeast Rrp14p is required for ribosomal subunit synthesis and for correct positioning of the mitotic spindle during mitosis

Published by

Nucleic Acids Research

Summary

journal-article

I-DIRT, A General Method for Distinguishing between Specific and Nonspecific Protein Interactions

Published by

Journal of Proteome Research

Summary

journal-article

I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions

Published by

Journal of Proteome Research

Summary

journal-article

A pre-ribosome-associated HEAT-repeat protein is required for export of both ribosomal subunits

Published by

Genes & Development

Summary

journal-article

A pre-ribosome-associated HEAT-repeat protein is required for export of both ribosomal subunits

Published by

Genes and Development

Summary

journal-article

Cic1p/Nsa3p is required for synthesis and nuclear export of 60S ribosomal subunits

Published by

RNA

Summary

journal-article

Cic1p/Nsa3p is required for synthesis and nuclear export of 60S ribosomal subunits

Published by

RNA

Summary

journal-article

Nob1p is required for cleavage of the 3 ' end of 18S rRNA

Published by

Molecular and Cellular Biology

Summary

journal-article

Nob1p is required for cleavage of the 3′ end of 18S rRNA

Published by

Molecular and Cellular Biology

Summary

journal-article

Ribosome synthesis and the cell-cycle: Integration or opportunism?

Published by

Yeast

Summary

journal-article

Yeast Nop15p is an RNA-binding protein required for pre-rRNA processing and cytokinesis

Published by

The EMBO Journal

Summary

journal-article

Yeast Nop15p is an RNA-binding protein required for pre-rRNA processing and cytokinesis

Published by

EMBO Journal

Summary

journal-article

Yeast Pescadillo is required for multiple activities during 60S ribosomal subunit synthesis

Published by

RNA

Summary

journal-article

Yeast Pescadillo is required for multiple activities during 60s ribosomal subunit synthesis

Published by

RNA

Summary

journal-article

Yeast Pescadillo is required for multiple activities during 60S ribosomal subunit synthesis (vol 8, pg 626, 2002)

Published by

RNA

Summary

journal-article

Erratum: Yeast Pescadillo is required for multiple activities during 60S ribosomal subunit synthesis (RNA (2002) 8 (626-636))

Published by

RNA

Summary

journal-article