Juan Nogales

About

I am PhD in Molecular Biology and Biochemistry with a deep passion for studying microbial metabolism. During my Postdoctoral I worked at Palsson’s labs, first at the University of Iceland and then at UCSD in the USA. I delved into the realm of systems biology and gained a comprehensive understanding of microbial metabolism and its biotechnological potential. Upon returning to Spain, I became fascinated with synthetic biology too, stablishing the Systems Biotechnology Group in 2017 mixing everything in a well-structured totum revolutum. Through the SBG, we are dedicated to advancing biotechnological frontiers by utilizing non-conventional metabolic features and providing innovative solutions to real-world challenges.

Work

Consejo Superior de Investigaciones Científicas

Spain

→

Education

Universidad Complutense de Madrid
Spain

→

PhD Molecular Biology and Biochemistry

Universidad de Extremadura
Spain

→

Biochemistry

Universidad de Extremadura
Spain

→

Biology

Publications

Bioconversion of a lignin-derived biphenyl dimer into the strategic building block 5-carboxyvanillic acid in Pseudomonas putida KT2440

Published by

Green Chemistry

Summary

journal-article

Exploring biotechnology for plastic recycling, degradation and upcycling for a sustainable future

Published by

Biotechnology Advances

Summary

review

Rational Design Assisted by Evolutionary Engineering Allows (De)Construction and Optimization of Complex Phenotypes in <i>Pseudomonas putida</i> KT2440

Published by

Microbial Biotechnology

Summary

journal-article

Bdellovibrio’s prey-independent lifestyle is fueled by amino acids as a carbon source

Published by

Applied Microbiology and Biotechnology

Summary

journal-article

A model-driven approach to upcycling recalcitrant feedstocks in Pseudomonas putida by decoupling PHA production from nutrient limitation

Published by

Cell Reports

Summary

journal-article

Characterization of Limnospira platensis PCC 9108 R-M and CRISPR-Cas systems

Published by

Microbiological Research

Summary

journal-article

Metabolic engineering Pseudomonas putida KT2440 for valorization of lignin-derived monomers and dimers into strategic building blocks.

Published by

Workshop Environmental Microbiology: Microbes As Safeguards of The Environment.

Summary

conference-paper

Recalcitrant feedstocks upcycling and de-coupling of polyhydroxyalkanoates production from nutrient limitation in Pseudomonas putida

Published by

International Conference On Fiber and Polymer Biotechnology (ifpb

Summary

conference-paper

Revolutionizing PET breakdown through precise control of phenotypic patterning in isogenic bacterial populations using diverse toggle switch variants.

Published by

7th Applied Synthetic Biology In Europe (asbe7)

Summary

conference-paper

Unearthing the Underground Metabolism Potential for Metabolic Expansion in Pseudomonas putida KT2440

Published by

International Biennial Pseudomonas Conference 2024

Summary

conference-paper

New strategy for bioplastic and exopolysaccharides production: Enrichment of field microbiomes with cyanobacteria

Published by

New Biotechnology

Summary

journal-article

Golden Standard: a complete standard, portable, and interoperative MoClo tool for model and non-model proteobacteria

Published by

Nucleic Acids Research

Summary

journal-article

Golden Standard: a complete standard, portable, and interoperative MoClo tool for model and non-model proteobacteria.

Published by

Nucleic acids research

Summary

journal-article

Technical upgrade of an open-source liquid handler to support bacterial colony screening

Published by

Frontiers in Bioengineering and Biotechnology

Summary

journal-article

Technical upgrade of an open-source liquid handler to support bacterial colony screening

Published by

Frontiers In Bioengineering and Biotechnology

Summary

journal-article

Optimized De Novo Eriodictyol Biosynthesis in Streptomyces albidoflavus Using an Expansion of the Golden Standard Toolkit for Its Use in Actinomycetes

Published by

International Journal of Molecular Sciences

Summary

journal-article

Optimized De Novo Eriodictyol Biosynthesis in Streptomyces albidoflavus Using an Expansion of the Golden Standard Toolkit for Its Use in Actinomycetes

Published by

International Journal of Molecular Sciences

Summary

journal-article

System metabolic engineering of Escherichia coli W for the production of 2-ketoisovalerate using unconventional feedstock

Published by

Frontiers in Bioengineering and Biotechnology

Summary

journal-article

System metabolic engineering of Escherichia coli W for the production of 2-ketoisovalerate using unconventional feedstock

Published by

Frontiers In Bioengineering and Biotechnology

Summary

journal-article

New Insights on Metabolic Features of Bacillus subtilis Based on Multistrain Genome-Scale Metabolic Modeling

Published by

International Journal of Molecular Sciences

Summary

journal-article

New Insights on Metabolic Features of Bacillus subtilis Based on Multistrain Genome-Scale Metabolic Modeling

Published by

International Journal of Molecular Sciences

Summary

journal-article

Highlighting the potential of Synechococcus elongatus PCC 7942 as platform to produce α-linolenic acid through an updated genome-scale metabolic modeling

Published by

Frontiers in Microbiology

Summary

journal-article

Highlighting the potential of Synechococcus elongatus PCC 7942 as platform to produce α-linolenic acid through an updated genome-scale metabolic modeling

Published by

Frontiers In Microbiology

Summary

journal-article

SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes

Published by

Nucleic Acids Research

Summary

journal-article

SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes

Published by

Nucleic Acids Research

Summary

journal-article

A promising Computational pipeline for microbial consortia analysis using Genome-scale metabolic models

Published by

Xviii Congreso de la Sociedad Española de Biotecnología, Biotec2023

Summary

conference-paper

A system biology approach integrating cyanide assimilation into central metabolism

Published by

Febs 2023

Summary

conference-paper

A systems biology approach for enhancing the production of functionalized polymers in Pseudomonas putida

Published by

Esbp 2023, 11th European Symposium On Biopolymers

Summary

conference-paper

Biología de sistemas. Modelado metabólico y su uso en contextualización mecanística de datos ómicos a distintos niveles de complejidad biológica

Published by

Xviii Congreso de la Sociedad Española de Biotecnología, Biotec 2023

Summary

conference-paper

Characterization of HmgX: the first member of a new family of homogentisate dioxygenases

Published by

Xviii Congreso de la Sociedad Española de Biotecnología

Summary

conference-paper

Compartmentalized dual-chamber bioreactor as a sustainable alternative in bioprocessing

Published by

Xviii Congreso de la Sociedad Española de Biotecnología

Summary

conference-paper

Development of a standard and user-friendly procedure for characterising genetic parts in bacteria highlights their context-dependency

Published by

Xviii Congreso de la Sociedad Española de Biotecnología, Biotec2023

Summary

conference-paper

Microbial communities-driven distributed catalysis as a new paradigm in Industrial Biotechnology.

Published by

Xxix Congreso de la Sem

Summary

conference-paper

Engineering Pseudomonas putida biocatalysts for the production of antimicrobial biopolyesters

Published by

Biotec 2023/ Xviii Congreso de la Sociedad Española de Biotecnología

Summary

conference-paper

Engineering synthetic social live in microorganisms: Biotechnological applications

Published by

Annual Workshop 2023 Department of Systems Biology: The Social Life of Microorganisms¿ Theory and Practice

Summary

conference-paper

Golden Standard: A complete standard, portable, and interoperative MoClo tool for model and non-model Proteobacteria

Published by

Xviii Congreso de la Sociendad Española de Biotecnología

Summary

conference-paper

Identification and characterization of new bacterial oxygenases involved in 4-hydroxyphenylacetic acid degradation.

Published by

3er Congreso Latinoamericano de Ecología Microbiana Isme-Lat 2023.

Summary

conference-paper

Insights on Metabolic Features of Bacillus subtilis Based on Multistrain Genome-Scale Metabolic Modeling

Published by

Semana del Doctorado Uam 2023

Summary

conference-paper

Living architecture

Published by

Urban and Regional Agriculture

Summary

book-chapter

Living architecture: metabolic applications for next-generation, selectively programmable bioreactors

Published by

Urban and Regional Agriculture

Summary

book-chapter

Microbial communities-driven distributed catalysis for Industrial Biotechnology

Published by

Emerging Issues of Microbial Communities

Summary

conference-paper

Modeling and engineering microbial consortia

Published by

Elixir Systems Biology Communityf2f/hybrid Meeting: Workshop On Microbiome Modeling

Summary

conference-paper

PepA: an extracellular manganese oxidase induced by lignin in Pseudomonas putida KT2440

Published by

Fems2023

Summary

conference-paper

Study of the physiological meaning of the isocitrate dehydrogenases duplication in Pseudomonas putida KT2440

Published by

Biotech 2023

Summary

conference-paper

Synthetic microbial consortia-based modular biosynthesis of naringenin

Published by

Xviiiii Congreso de la Sociedad Española de Biotecnología

Summary

conference-paper

Systems Metabolic Engineering for Enhanced 2-ketoisovalerate Production from Whey Fermentation by Escherichia coli W

Published by

Xviii Congreso de la Sociedad Española de Biotecnología, Biotec 2023

Summary

conference-paper

Unraveling the role of enzyme promiscuity in driving new metabolic traits in Pseudomonas putida

Published by

Xviii Congreso de la Sociedad Española de Biotecnología

Summary

conference-paper

Toward merging bottom–up and top–down model-based designing of synthetic microbial communities

Published by

Current Opinion in Microbiology

Summary

journal-article

Toward merging bottom–up and top–down model-based designing of synthetic microbial communities

Published by

Current Opinion In Microbiology

Summary

review

Toward merging bottom–up and top–down model-based designing of synthetic microbial communities

Published by

Current Opinion in Microbiology

Summary

journal-article

Synechococcus elongatus PCC 7942 as a Platform for Bioproduction of Omega-3 Fatty Acids

Published by

Life-Basel

Summary

journal-article

Synechococcus elongatus PCC 7942 as a Platform for Bioproduction of Omega-3 Fatty Acids

Published by

Life

Summary

journal-article

The metabolic potential of plastics as biotechnological carbon sources – Review and targets for the future

Published by

Metabolic Engineering

Summary

journal-article

The metabolic potential of plastics as biotechnological carbon sources – Review and targets for the future

Published by

Metabolic Engineering

Summary

journal-article

Interrogation of Essentiality in the Reconstructed Haemophilus influenzae Metabolic Network Identifies Lipid Metabolism Antimicrobial Targets: Preclinical Evaluation of a FabH β-Ketoacyl-ACP Synthase Inhibitor

Published by

Msystems

Summary

journal-article

Interrogation of Essentiality in the Reconstructed Haemophilus influenzae Metabolic Network Identifies Lipid Metabolism Antimicrobial Targets: Preclinical Evaluation of a FabH β-Ketoacyl-ACP Synthase Inhibitor

Published by

mSystems

Summary

journal-article

Bioconversion of lignin-derived aromatics into the building block pyridine 2,4-dicarboxylic acid by engineering recombinant Pseudomonas putida strains

Published by

Bioresource Technology

Summary

journal-article

Bioconversion of lignin-derived aromatics into the building block pyridine 2,4-dicarboxylic acid by engineering recombinant Pseudomonas putida strains

Published by

Bioresource Technology

Summary

journal-article

Synthetic Control of Metabolic States in Pseudomonas putida by Tuning Polyhydroxyalkanoate Cycle

Published by

Mbio

Summary

journal-article

Synthetic Control of Metabolic States in Pseudomonas putida by Tuning Polyhydroxyalkanoate Cycle

Published by

mBio

Summary

journal-article

Bacterial metabolism and pathogenesis intimate intertwining: time for metabolic modelling to come into action

Published by

Microbial Biotechnology

Summary

other

Bacterial metabolism and pathogenesis intimate intertwining: time for metabolic modelling to come into action

Published by

Microbial Biotechnology

Summary

journal-article

A user-friendly strain design pipeline enabling the reproducible identification of Knock-Out strategies for overproducing metabolites of interest

Published by

European Congress On Computational Biology 2022 (eccb2022)

Summary

conference-paper

Abordando la crisis del plástico mediante Ingeniería Metabólica de Sistemas

Published by

Workshop Sebiot-Susplast: el Papel de la Biotecnología En la Circularidad de los Plásticos

Summary

conference-paper

GALLANT: A standardized workflow for multi strain Genome-scale metabolic modeling.

Published by

European Conference On Computational Biology (eccb2022)

Summary

conference-paper

Upscaling DBTL cycles through synthetic biology hierarchy abstraction

Published by

Workshop On Synthetic Life

Summary

conference-paper

MIXed plastics biodegradation and UPcycling using microbial communities: EU Horizon 2020 project MIX-UP started January 2020

Published by

Environmental Sciences Europe

Summary

journal-article

MIXed plastics biodegradation and UPcycling using microbial communities: EU Horizon 2020 project MIX-UP started January 2020

Published by

Environmental Sciences Europe

Summary

journal-article

Recent advances in model-assisted metabolic engineering

Published by

Current Opinion In Systems Biology

Summary

journal-article

Recent advances in model-assisted metabolic engineering

Published by

Current Opinion in Systems Biology

Summary

journal-article

A portable library of phosphate-depletion based synthetic promoters for customable and automata control of gene expression in bacteria

Published by

Microbial Biotechnology

Summary

journal-article

A portable library of phosphate-depletion based synthetic promoters for customable and automata control of gene expression in bacteria

Published by

Microbial Biotechnology

Summary

journal-article

Assessment strategy for bacterial lignin depolymerization: Kraft lignin and synthetic lignin bioconversion with Pseudomonas putida

Published by

Bioresource Technology Reports

Summary

journal-article

Assessment strategy for bacterial lignin depolymerization: Kraft lignin and synthetic lignin bioconversion with Pseudomonas putida

Published by

Bioresource Technology Reports

Summary

journal-article

Repositioning microbial biotechnology against COVID-19: the case of microbial production of flavonoids

Published by

Microbial Biotechnology

Summary

review

Repositioning microbial biotechnology against COVID-19: the case of microbial production of flavonoids

Published by

Microbial Biotechnology

Summary

journal-article

Metabolic modelling approaches for describing and engineering microbial communities

Published by

Computational and Structural Biotechnology Journal

Summary

review

Metabolic modelling approaches for describing and engineering microbial communities

Published by

Computational and Structural Biotechnology Journal

Summary

journal-article

Controlling metabolic states in Pseudomonas putida by tuning polyhydroxyalkanoate cycle.

Published by

European Federation of Biotechnology

Summary

conference-paper

FLYCOP web, an user-friendly server for Synthetic Microbial Consortia optimization.

Published by

Viii Bioinformatics Student Symposium

Summary

conference-paper

Flavos: Web-Based Framework for the Production of Functionalized Flavonoids À La Carte Using Synthetic Microbial Consortia (SMC).

Published by

Metabolic Engineering 14

Summary

conference-paper

From fossil fuel-based plastics to bioplastics through model-driven and synthetic biology-assisted engineering of Pseudomonas putida KT2440

Published by

International Symposium On Biopolymers Webinars 2021

Summary

conference-paper

Metabolic reconstruction of Pseudomonas chlororaphis ATCC 9446 to understand its metabolic potential as a phenazine-1-carboxamide-producing strain

Published by

Applied Microbiology and Biotechnology

Summary

journal-article

Metabolic reconstruction of Pseudomonas chlororaphis ATCC 9446 to understand its metabolic potential as a phenazine-1-carboxamide-producing strain

Published by

Applied Microbiology and Biotechnology

Summary

journal-article

Carbon source influence on extracellular ph changes along bacterial cell-growth

Published by

Genes

Summary

journal-article

Carbon source influence on extracellular ph changes along bacterial cell-growth

Published by

Genes

Summary

journal-article

Providing new insights on the biphasic lifestyle of the predatory bacterium Bdellovibrio bacteriovorus through genome-scale metabolic modeling

Published by

Plos Computational Biology

Summary

journal-article

Providing new insights on the biphasic lifestyle of the predatory bacterium Bdellovibrio bacteriovorus through genome-scale metabolic modeling

Published by

PLoS Computational Biology

Summary

journal-article

Understanding the metabolism of the tetralin degrader Sphingopyxis granuli strain TFA through genome-scale metabolic modelling

Published by

Scientific Reports

Summary

journal-article

Understanding the metabolism of the tetralin degrader Sphingopyxis granuli strain TFA through genome-scale metabolic modelling

Published by

Scientific Reports

Summary

journal-article

MEMOTE for standardized genome-scale metabolic model testing

Published by

Nature Biotechnology

Summary

other

MEMOTE for standardized genome-scale metabolic model testing

Published by

Nature Biotechnology

Summary

journal-article

High-quality genome-scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities

Published by

Environmental Microbiology

Summary

journal-article

High-quality genome-scale metabolic modelling of Pseudomonas putida highlights its broad metabolic capabilities

Published by

Environmental Microbiology

Summary

journal-article

A genome-scale metabolic reconstruction of Haemophilus influenzae reveals FabH as a potential target for antimicrobial therapeutic development

Published by

Fems Online Conference On Microbiology. 28-31 Octubre (2020)(congreso Internacional Online)

Summary

conference-paper

Molecular Basis of Medium-Chain Lenght-PHA Metabolism of Pseudomonas putida

Published by

The Handbook of Polyhydroxyalkanoates: Microbial Biosynthesis and Feedstocks

Summary

book-chapter

Providing new insights on the byphasic lifestyle of the predatory bacterium Bdellovibrio bacteriovorus through genome-scale metabolic modeling

Published by

bioRxiv

Summary

other

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing (Nature Biotechnology, (2020), 38, 3, (272-276), 10.1038/s41587-020-0446-y)

Published by

Nature Biotechnology

Summary

journal-article

Influence of the Crc global regulator on substrate uptake rates and the distribution of metabolic fluxes in Pseudomonas putida KT2440 growing in a complete medium

Published by

Environmental Microbiology

Summary

journal-article

Influence of the Crc global regulator on substrate uptake rates and the distribution of metabolic fluxes in Pseudomonas putida KT2440 growing in a complete medium

Published by

Environmental Microbiology

Summary

journal-article

Pseudomonas putida KT2440 metabolism undergoes sequential modifications during exponential growth in a complete medium as compounds are gradually consumed

Published by

Environmental Microbiology

Summary

journal-article

Pseudomonas putida KT2440 metabolism undergoes sequential modifications during exponential growth in a complete medium as compounds are gradually consumed

Published by

Environmental Microbiology

Summary

journal-article

Quantifying dynamic mechanisms of auto-regulation in Escherichia coli with synthetic promoter in response to varying external phosphate levels

Published by

Scientific Reports

Summary

journal-article

Quantifying dynamic mechanisms of auto-regulation in Escherichia coli with synthetic promoter in response to varying external phosphate levels

Published by

Scientific Reports

Summary

journal-article

Degradation of Aromatic Compounds in <i>Pseudomonas</i>: A Systems Biology View

Published by

Aerobic Utilization of Hydrocarbons, Oils, and Lipids

Summary

book-chapter

Changes in the metabolic fluxes of Pseudomonas putida KT2440 during its exponential growth in a complete medium derived from the sequential consumption of the carbon sources

Published by

Fems 2019: 8th Congress of European Microbiologists

Summary

conference-paper

FLYCOP: Metabolic modeling-based analysis and engineering microbial communities

Published by

Bioinformatics

Summary

journal-article

Microbial Oils as Nutraceuticals and Animal Feeds

Published by

Health Consequences of Microbial Interactions With Hydrocarbons, Oils, and Lipids

Summary

book-chapter

One-Component Systems that Regulate the Expression of Degradation Pathways for Aromatic Compounds

Published by

Springer Ebooks

Summary

book-chapter

FLYCOP: Metabolic modeling-based analysis and engineering microbial communities

Published by

Bioinformatics

Summary

journal-article

Anaerobic Pathways for the Catabolism of Aromatic Compounds

Published by

Lignin Valorization: Emerging Approaches

Summary

book-chapter

Chapter 13: Anaerobic Pathways for the Catabolism of Aromatic Compounds

Published by

Rsc Energy and Environment Series

Summary

book-chapter

Chapter 13: Anaerobic Pathways for the Catabolism of Aromatic Compounds

Published by

RSC Energy and Environment Series

Summary

book-chapter

Memote: A community driven effort towards a standardized genome-scale metabolic model test suite

Published by

bioRxiv

Summary

other

Systems analysis and synthetic tuning of the PHA cycle in Pseudomonas putida KT2440

Published by

16th International Symposium On Biopolymers

Summary

conference-paper

Current Challenges in the Computational Modelling of Molecular Recognition Processes

Published by

Computational Tools For Chemical Biology. Chemical Biology Series.

Summary

book-chapter

Outlining core pathways of amyloid toxicity in bacteria with the RepA-WH1 prionoid

Published by

Frontiers In Microbiology

Summary

journal-article

Outlining core pathways of amyloid toxicity in bacteria with the RepA-WH1 prionoid

Published by

Frontiers in Microbiology

Summary

journal-article

Degradation of Aromatic Compounds in Pseudomonas: A Systems Biology View

Published by

Aerobic Utilization of Hydrocarbons, Oils and Lipids

Summary

book-chapter

A Dynamic Model of the Phosphate Response System with Synthetic Promoters in Escherichia coli

Published by

Proceedings of The 14th European Conference On Artificial Life, Ecal 2017

Summary

conference-paper

Applications of genome-scale metabolic models of microalgae and cyanobacteria in biotechnology

Published by

Microalgae-Based Biofuels and Bioproducts: From Feedstock Cultivation to End-Products

Summary

book-chapter

Deciphering lignin metabolism in Pseudomonas putida.

Published by

7th Congress of European Microbiologists. Fems 2017.

Summary

conference-paper

Expanding the computable reactome in Pseudomonas putida reveals metabolic cycles providing robustness

Published by

bioRxiv

Summary

other

Living Architecture (LIAR): Metabolically engineered building units

Published by

Cultivated Building Materials: Industrialized Natural Resources For Architecture and Construction

Summary

book-chapter

System analysis of the PHA cycle with a focus on PhaZ in the metabolic robustness of Pseudomonas putida

Published by

9th European Symposium On Biopolymes

Summary

conference-paper

PHA metabolism influences metabolic robustness cycle in Pseudomonas putida: the role of PhaZ

Published by

15th International Symposium On Biopolymers

Summary

conference-paper

One-Component Systems that Regulate the Expression of Degradation Pathways for Aromatic Compounds

Published by

Handbook of Hydrocarbon and Lipid Microbiology

Summary

book-chapter

Bdellovibrio bacteriovorus HD100 AS BIOTECHNOLOGICAL LYTIC AGENT FOR POLYHYDROXYALCANOATES (PHA) RECOVERY

Published by

Uk Society of Biomaterials Uksb2016

Summary

conference-paper

Dynamic metabolism of the predatory bacteria Bdellovibrio bacteriovorus HD100 preying on PHA-producers: a new lytic agent for biotechnological approaches

Published by

Bio.iberoamérica 2016

Summary

conference-paper

Pseudomonas putida metabolic network: Polyhydroxyalkanoates metabolism as guarantee of optimal metabolic fitness

Published by

International Symposium On Biopolymers 2016 (isbp2016)

Summary

conference-paper

Synthetic and systems biology approaches towards the overproduction of polyhydroxyalkanoates in Pseudomonas putida KT2440.

Published by

Uk Society For Biomaterials (uksb)

Summary

conference-paper

Genome sequence of Pseudomonas azelaica strain Aramco J

Published by

Genome Announcements

Summary

journal-article

Do genome-scale models need exact solvers or clearer standards?

Published by

Molecular Systems Biology

Summary

journal-article

Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features

Published by

Systematic and Applied Microbiology

Summary

journal-article

Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features

Published by

Systematic and Applied Microbiology

Summary

journal-article

The Crc/CrcZ-CrcY global regulatory system helps the integration of gluconeogenic and glycolytic metabolism in Pseudomonas putida

Published by

Environmental Microbiology

Summary

journal-article

The Crc/CrcZ-CrcY global regulatory system helps the integration of gluconeogenic and glycolytic metabolism in Pseudomonas putida

Published by

Environmental Microbiology

Summary

journal-article

Adaptive evolution of Thermotoga maritima reveals plasticity of the ABC transporter network

Published by

Applied and Environmental Microbiology

Summary

journal-article

Adaptive evolution of Thermotoga maritima reveals plasticity of the ABC transporter network

Published by

Applied and Environmental Microbiology

Summary

journal-article

Genome sequence of Pseudomonas azelaica strain Aramco J

Published by

Microbiology Resource Announcements

Summary

journal-article

In silico analysis and model-driven optimization of the biodesulfurization process in Pseudomonas putida.

Published by

4th Conference On Constraint-based Reconstruction and Analysis (cobra 2015)

Summary

conference-paper

A Practical Protocol for Integration of Transcriptomics Data into Genome-Scale Metabolic Reconstructions

Published by

Springer Protocols Handbooks

Summary

other

Cyanobacteria as photosynthetic biocatalysts: A systems biology perspective

Published by

Molecular Biosystems

Summary

review

Cyanobacteria as photosynthetic biocatalysts: A systems biology perspective

Published by

Molecular BioSystems

Summary

journal-article

COBRA vs PREDATOR: A chance for multi-scale modeling of the microbial prey-predator relationship

Published by

Conference On Constraint-based Reconstruction and Analysis (cobra 2015)

Summary

conference-paper

Constraint-based de-composition of the metabolic robustness in bacteria.

Published by

4th Conference On Constraint-based Reconstruction and Analysis (cobra 2015)

Summary

conference-paper

Constraint-based metabolic modeling: applications on microalgae biotechnology and beyond

Published by

Achema 2015

Summary

conference-paper

FINE TUNING OF METABOLISM: THE ROLE OF CRC/CRCZ-CRCY SYSTEM IN INTEGRATING GLUCONEOGENIC AND GLYCOLYTIC METABOLISM IN PSEUDOMONAS PUTIDA

Published by

Fems 2015 - 6th Congress of European Microbiologists

Summary

conference-paper

Genome-scale metabolic reconstruction and analysis of Azoarcus sp. CIB, a model bacterium in anaerobic degradation of aromatic compounds.

Published by

4th Conference On Constraint-based Reconstruction and Analysis (cobra 2015).

Summary

conference-paper

Do genome-scale models need exact solvers or clearer standards?

Published by

Molecular Systems Biology

Summary

other

A Practical Protocol for Genome-Scale Metabolic Reconstructions

Published by

Springer Protocols Handbooks

Summary

other

Optimizing genome-scale network reconstructions

Published by

Nature Biotechnology

Summary

journal-article

Optimizing genome-scale network reconstructions

Published by

Nature Biotechnology

Summary

journal-article

DECODING THE METABOLIC ABILITIES OF THE PREDATORY BACTERIUM Bdellovibrio bacteriovorus THROUGH GENOME-SCALE METABOLIC RECONSTRUCTION

Published by

Biotec 2014

Summary

conference-paper

GENOME-DERIVED BLUEPRINT INFORMATION TO ENHANCE BIODESULFURIZATION IN PSEUDOMONAS STRAINS.

Published by

Congreso Anque-icce-biotec

Summary

conference-paper

Genome derived blue-print information to enhance biodesulfurization in Pseudomonas strains.

Published by

Congreso Nacional de Biotecnología Biotec2014.

Summary

conference-paper

Genome sequence of Pseudomonas azelaica HBP1, which catabolizes 2-hydroxybiphenyl fungicide

Published by

Genome Announcements

Summary

journal-article

Genome-scale decomposition of metabolic robustness from Pseudomonas

Published by

Pseudomonas Workshop

Summary

conference-paper

Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii

Published by

Microbial Cell Factories

Summary

journal-article

Aerobic degradation of aromatic compounds

Published by

Current Opinion In Biotechnology

Summary

review

Aerobic degradation of aromatic compounds

Published by

Current Opinion in Biotechnology

Summary

journal-article

Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii

Published by

Microbial Cell Factories

Summary

journal-article

Toward systems metabolic engineering in cyanobacteria: Opportunities and bottlenecks

Published by

Bioengineered Bugs

Summary

journal-article

Toward systems metabolic engineering in cyanobacteria: Opportunities and bottlenecks

Published by

Bioengineered

Summary

journal-article

Ingeniería Metabólica de Sistemas: Nuevas oportunidades en Biotecnología

Published by

Xxxvi Congreso de la Sociedad Española de Bioquímica y Biología Molecular

Summary

conference-paper

Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis

Published by

Proceedings of The National Academy of Sciences of The United States of America

Summary

journal-article

An in silico re-design of the metabolism in Thermotoga maritima for increased biohydrogen production

Published by

International Journal of Hydrogen Energy

Summary

journal-article

An in silico re-design of the metabolism in Thermotoga maritima for increased biohydrogen production

Published by

International Journal of Hydrogen Energy

Summary

journal-article

Cross-regulation during the simultaneous catabolism of aromatic compounds in <i>Pseudomonas putida</i> KT2440

Published by

Febs Journal

Summary

conference-paper

Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis

Published by

Proceedings of the National Academy of Sciences of the United States of America

Summary

journal-article

Unravelling the gallic acid degradation pathway in bacteria: The gal cluster from Pseudomonas putida

Published by

Molecular Microbiology

Summary

journal-article

A genomic view of the catabolism of aromatic compounds in Pseudomonas

Published by

Handbook of Hydrocarbon and Lipid Microbiology

Summary

book-chapter

Influence of polyhydroxyalkanoate content on central carbon metabolism operation of Pseudomonas putida KT2442.

Published by

Systems Biology of Microorganisms.

Summary

conference-paper

Las dos caras del anillo aromático, una fuente de estrés y de energía para los microorganismos.

Published by

Xxxiii Congreso Sociedad Española Bioquímica y Biología Molecular.

Summary

conference-paper

Unravelling the gallic acid degradation pathway in bacteria: The gal cluster from Pseudomonas putida

Published by

Molecular Microbiology

Summary

journal-article

A Genomic View of the Catabolism of Aromatic Compounds in Pseudomonas

Published by

Springer Ebooks

Summary

other

A Systems Biology approach for studying the polyhydroxyalkanoate metabolism in Pseudomonas putida KT2442

Published by

Pseudomonas Xii International Conference

Summary

conference-paper

Genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory

Published by

Vii Congreso Iberoamericano de Biofisica

Summary

conference-paper

A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory

Published by

Bmc Systems Biology

Summary

review

A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory

Published by

BMC Systems Biology

Summary

journal-article

Characterization of two metabolic networks and their associated stress responses in P. putida KT2440

Published by

First Sysmo Evaluation Conference

Summary

conference-paper

Reconstrucción metabólica a escala genómica de Pseudomonas putida KT2440: iJN746 como factoría celular

Published by

Iii Reunión de la Red Nacional de Genómica Bacteriana

Summary

conference-paper

Characterization of the last step of the aerobic phenylacetic acid degradation pathway

Published by

Microbiology-Sgm

Summary

journal-article

Characterization of the last step of the aerobic phenylacetic acid degradation pathway

Published by

Microbiology

Summary

journal-article

Gallic acid uptake in Pseudomonas putida: The GalT/GalP two-component transport System

Published by

11th International Congress On Pseudomonas

Summary

conference-paper

Gallic acid degradation in the soil bacterium Pseudomonas putida KT2440: deciphering new regulatory and catabolic features in the catabolism of aromatic compounds

Published by

2º Fems Congress of European Microbiologists

Summary

conference-paper

Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray

Published by

Environmental Microbiology

Summary

journal-article

Genomic insights in gallic acid degradation: the gal cluster from Pseudomonas putida KT2440 as a model system

Published by

10th International Congress On Pseudomonas

Summary

conference-paper

Análisis genómico y funcional del potencial catabólico de la bacteria prototipo en degradación de compuestos aromáticos, Pseudomonas putida KT2440

Published by

Ii Reunión Red Nacional de Genómica Bacteriana

Summary

conference-paper

Molecular characterization of the gallate dioxygenase from Pseudomonas putida KT2440: The prototype of a new subgroup of extradiol dioxygenases

Published by

Journal of Biological Chemistry

Summary

journal-article

Molecular characterization of the gallate dioxygenase from Pseudomonas putida KT2440: The prototype of a new subgroup of extradiol dioxygenases

Published by

Journal of Biological Chemistry

Summary

journal-article

Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray

Published by

Environmental Microbiology

Summary

journal-article

Caracterización molecular de la galato dioxigenasa de Pseudomonas putida KT2440: el prototipo de un nuevo subgrupo de extradiol dioxigenasas

Published by

Xxvii Congreso de la Sociedad Española de Bioquímica y Biología Molecular

Summary

conference-paper

Functional analysis and regulation of the malate synthase from Chlamydomonas reinhardtii

Published by

Planta

Summary

journal-article

Functional analysis and regulation of the malate synthase from Chlamydomonas reinhardtii

Published by

Planta

Summary

journal-article

Análisis genómico del catabolismo de compuestos aromáticos en bacterias

Published by

Reunión de la Red de Genómica Bacteriana

Summary

conference-paper

Caracterización molecular de la ruta de degradación de ácido gálico en Pseudomonas putida

Published by

Congreso Nacional de Biotecnología. Biotec¿2004

Summary

conference-paper

Genome search reveals a novel meta-cleavage pathway for aromatics in Pseudomonas putida KT2440

Published by

Environmental Genomics and Environmental Metagenomics

Summary

conference-paper

Aislamiento, expresión heteróloga y regulación del gen para la malato sintasa del alga Chlamydomonas reinhardtii

Published by

Xxvi Congreso de la Sociedad Española de Bioquímica y Biología Molecular

Summary

conference-paper