RAMAKRISHNA MEDURI

Experienced Research Scientist in Genetics & Bioinformatics
Not specified, USA.

About

Highly accomplished and dedicated research scientist with over a decade of experience in Genetics, Bioinformatics, and Neuroscience, specializing in computational biology, statistical analysis, and AI/Machine Learning applications for biosciences. Proven expertise in next-generation sequencing, structural modeling, and drug design, contributing significantly to understanding complex biological systems and advancing therapeutic insights. Seeking to leverage extensive research background and advanced analytical skills in a senior research or development role within the biotechnology or pharmaceutical industry.

Work

Krasnow Institute for Advanced Neuroscience, GMU
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Molecular & Computational Researcher

Fairfax, VA, USA

Summary

Conducted molecular and computational research in Fly genetics and Developmental Neuroscience, investigating the role of neural networks in Drosophila development and behavior.

Highlights

Validated UAS RNAi constructs and performed large screens using Cell sorting and Immunohistochemistry (IHC) with live Confocal imaging.

Executed advanced statistical data analysis utilizing R (Bio-conductor module), PYTHON, TMev4, and GeneSpring GX 11 to interpret complex biological datasets.

Performed cloning, isolation experiments, larval dissection, and in vivo loss-of-function/gain-of-function analyses on genes impacting PNS and dendritic arborization.

Identified and validated several p-elements inhibiting behavioral aspects through a high-throughput miRNA screen and behavioral assay.

Dept. of Biotech., Botany & Zoology, Dr.V.S Krishna Govt. Degree & Pg College
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Lecturer

Not specified, Andhra Pradesh, INDIA

Summary

Delivered comprehensive lecture series for undergraduate and postgraduate students in Bioinformatics, Drug Designing, and Biostatistics.

Highlights

Developed and delivered engaging lecture series on Bioinformatics and Introduction to Drug Designing for undergraduate students.

Taught advanced Biostatistics and Bioinformatics topics to postgraduate students, enhancing their analytical and computational skills.

Department of Human Genetics, Andhra University
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Graduate Trainer & Workshop Coordinator

Visakhapatnam, Andhra Pradesh, INDIA

Summary

Coordinated and delivered graduate training and workshops focused on Biostatistics, Epidemiological Genetics, and advanced genetic analysis techniques.

Highlights

Led graduate training and workshops in Biostatistics and Epidemiological Genetics, equipping participants with essential research methodologies.

Conducted computational, statistical, and epidemiological genetic analysis utilizing MDR and LD methods for complex genetic studies.

Performed Gene and Allele frequency and RFLP analysis, contributing to fundamental genetic research and understanding.

Department of Bioinformatics and Computational Biology, School of Systems Biology George Mason University
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Lead Bioinformatics & Computational Biology Researcher

Fairfax, VA, USA

Summary

Led a bioinformatics research project focused on genome annotation of Mariprofundus ferroxydans pathways, identifying gene contigs for gluconeogenesis.

Highlights

Directed 'Genome Annotation of Mariprofundus ferroxydans pathways' project, identifying gene contigs encoding enzymes in the Gluconeogenesis pathway.

Conducted extensive gene-gene interaction studies for enzymes involved in Gluconeogenesis pathway and Glucose Metabolism.

Implemented data-driven approaches using PERL and PYTHON for robust bioinformatics analysis.

Performed structural modeling of proteins using Swiss-prot PDB-viewer, RASMOL, and PyMOL.

Center for Biomedical Genomics and Informatics, Dept. of Molecular and Microbiology, George Mason University
|

Graduate Research Assistant

Fairfax, VA, USA

Summary

Conducted research in Breast Cancer Biology, investigating the tumor suppressor role of the KCNRG gene in CLL and MM.

Highlights

Investigated the KCNRG gene's role as a tumor suppressor in CLL and MM, aiming to elucidate its function in B-CLL disease progression.

Executed fundamental molecular biology techniques including gel electrophoresis, PCR, transfection, and E. coli transformation/cultivation.

Contributed to understanding tumorigenicity by analyzing the impact of KCNRG gene loss on B-cell Lymphocytes.

Sri Jayendra Saraswathi Institute of Medical Sciences and Research
|

Graduate Research Project Lead

Chennai, Tamil Nadu, INDIA

Summary

Led a graduate research project on "Infiltrating Ductal Carcinoma: Breast Cancer in Humans," focusing on identifying oncogenes and annotating the genome.

Highlights

Identified oncogenes and putative oncogenic markers in breast cancer using advanced Bioinformatics tools and packages.

Performed comprehensive structural analysis of polypeptide chains and their interactions using Swiss-prot PDB viewer and RASMOL.

Annotated Chromosome 17 contig of NM23 H1 and H2, including regulatory elements, to advance understanding of cancer genomics.

Education

George Mason University
Fairfax, VA, USA

PhD

Neuroscience

Deep Learning.AI
Remote, Not specified, USA

Certificate

AI for Medical Diagnosis

Icahn School of Medicine at Mount Sinai
Remote, Not specified, USA

Certificate

Systems Biology & Biotechnology Specialization: Introduction to Systems Biology

MIT
Remote, Not specified, USA

Certificate

Probability: The Science of Uncertainty & Data

Stanford University
Remote, Not specified, USA

Certificate

Next generation Sequencing using Python

Johns Hopkins University
Remote, Not specified, USA

Certificate

Introduction to Data Science, using R

University of Michigan
Remote, Not specified, USA

Certificate

Introduction to Python Programming

George Mason University/Polytechnic Institute of NYU
Fairfax, VA, USA

M.S.

Bioinformatics

Andhra University
Visakhapatnam, Andhra Pradesh, INDIA

M.Sc.

Molecular Genetics

Andhra University
Visakhapatnam, Andhra Pradesh, INDIA

B.Sc.

Human Genetics, Biotechnology, Bio-Chemistry

Awards

J. Shelton Horsley Research Award

Awarded By

Virginia Academy of Sciences

Received the highest honor bestowed by the Virginia Academy of Sciences for outstanding research contributions.

7th Rank in Andhra University Common Entrance Test (AUCET)

Awarded By

Dept. Human Genetics & Molecular Genetics, Andhra University

Achieved 7th rank in a highly competitive university entrance examination for Human Genetics & Molecular Genetics.

Publications

Functional genomic analyses of two morphologically distinct classes of Drosophila sensory neurons: Post-mitotic roles of transcription factors in dendritic patterning.

Published by

PLoS ONE

Summary

Co-authored a publication detailing functional genomic analyses of Drosophila sensory neurons and the post-mitotic roles of transcription factors in dendritic patterning.

Cut via CrebA transcriptionally regulates the COPII secretory pathway to direct dendrite development in Drosophila.

Published by

J. Cell Sci.

Summary

Co-authored research on how Cut via CrebA transcriptionally regulates the COPII secretory pathway to direct dendrite development in Drosophila.

The RhoGEF Trio functions in sculpting class specific dendrite morphogenesis in Drosophila sensory neurons.

Published by

PLoS ONE

Summary

Co-authored a publication on the function of RhoGEF Trio in sculpting class-specific dendrite morphogenesis in Drosophila sensory neurons.

siRNAs with high specificity to the target: a systematic design by CRM algorithm.

Published by

Mol Biol.

Summary

Co-authored a publication on the systematic design of siRNAs with high target specificity using the CRM algorithm.

Skills

Programming & Data Analysis

PERL, PYTHON, R (Bio-conductor), Statistical Data Analysis, Machine Learning, Artificial Intelligence (AI), Biostatistics, Epidemiological Genetics, MDR (Multifactor Dimensionality Reduction), LD Methods (Linkage Disequilibrium), TMev4, GeneSpring GX 11, HTML.

Bioinformatics & Genomics

Next Generation Sequencing (NGS) Data Analysis, Genome Annotation, Gene Ontology (GSEA), Phylogenetic Analysis, Genome Databases, Nucleotide Databases, Protein Databases, Gene-Gene Interaction Studies, RFLP Analysis.

Molecular & Cellular Biology

Cell Sorting Techniques, Immunohistochemistry (IHC), Confocal Imaging, Cloning, Isolation Experiments, Larval Dissection, In Vivo Loss-of-Function/Gain-of-Function Analysis, High-throughput miRNA Screen, Behavioral Assays, Gel Electrophoresis, PCR, Transfection, E. coli Transformation, Cell Cultivation.

Structural Biology & Drug Discovery

Structural Modeling, SWISS-MODEL, NCBI's iCn3D, PyMol, RASMOL, AUTODOCK, AUTODOCK-Vina, Drug Designing, Docking Analysis.

Neuroscience Research

Neuronal Dendritic Architecture Analysis, Neuromantic, Neurolucida Packages, Drosophila Genetics, Developmental Neuroscience.

Software & Tools

Adobe Photoshop, Dreamweaver, Flash CS4.