B.S. in Computer Science with a Specialization of Bioinformatics
Publications
Combined single-cell profiling of chromatin–transcriptome and splicing across brain cell types, regions and disease state
Published by
Nature Biotechnology
Summary
journal-article
Single-cell transcriptomic and chromatin dynamics of the human brain in PTSD
Published by
Nature
Summary
journal-article
Abstract 2749: Single-cell 3D genome structure analysis reveals clonal evolution and heterogeneity in acute myeloid leukemia
Published by
Cancer Research
Summary
journal-article
CytoFlow: A Novel Computational Method to Construct Signal Transduction Networks at Single-Cell Resolution Based on Flow Networks
Published by
2024 IEEE International Conference on Medical Artificial Intelligence (MedAI)
Summary
conference-paper
iMIRACLE: An Iterative Multi-View Graph Neural Network to Model Intercellular Gene Regulation From Spatial Transcriptomic Data
Summary
conference-paper
scACT: Accurate Cross-modality Translation via Cycle-consistent Training from Unpaired Single-cell Data
Summary
conference-paper
The single-cell opioid responses in the context of HIV (SCORCH) consortium
Published by
Molecular Psychiatry
Summary
journal-article
Transcriptomic sex differences in postmortem brain samples from patients with psychiatric disorders
Published by
Science Translational Medicine
Summary
journal-article
A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex
Published by
Science
Summary
journal-article
Cross-ancestry atlas of gene, isoform, and splicing regulation in the developing human brain
Published by
Science
Summary
journal-article
Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data
Published by
Science Advances
Summary
journal-article
Massively parallel characterization of regulatory elements in the developing human cortex
Published by
Science
Summary
journal-article
Single-cell genomics and regulatory networks for 388 human brains
Published by
Science
Summary
journal-article
Single-cell genomics and regulatory networks for 388 human brains
Summary
preprint
Single-cell genomics and regulatory networks for 388 human brains
Published by
Science
Summary
journal-article
Single-cell multi-cohort dissection of the schizophrenia transcriptome
Published by
Science
Summary
journal-article
Using a comprehensive atlas and predictive models to reveal the complexity and evolution of brain-active regulatory elements
Published by
Science Advances
Summary
journal-article
ScISOr-ATAC reveals convergent and divergent splicing and chromatin specificities between matched cell types across cortical regions, evolution, and in Alzheimer’s Disease
Summary
preprint
scENCORE: leveraging single-cell epigenetic data to predict chromatin conformation using graph embedding
Published by
Briefings in Bioinformatics
Summary
journal-article
Single-Cell Omics Arena: A Benchmark Study for Large Language Models on Cell Type Annotation Using Single-Cell Data
Summary
preprint
Translator: A Transfer Learning Approach to Facilitate Single-Cell ATAC-Seq Data Analysis from Reference Dataset
Published by
Journal of Computational Biology
Summary
journal-article
Integrating longitudinal clinical and microbiome data to predict growth faltering in preterm infants
Published by
Journal of Biomedical Informatics
Summary
journal-article
InsuLock: A Weakly Supervised Learning Approach for Accurate Insulator Prediction, and Variant Impact Quantification
Published by
Genes
Summary
journal-article
InsuLock: A Weakly Supervised Learning Approach for Accurate Insulator Prediction, and Variant Impact Quantification
Published by
Genes
Summary
journal-article
InsuLock: A Weakly Supervised Learning Approach for Accurate Insulator Prediction, and Variant Impact Quantification