Thorben Cordes

Work

TU Dortmund University
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Professor for Biophysical Chemistry, Chair for Physical Chemistry I

Germany

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Ludwig-Maximilians-Universität München
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Faculty / Professor

Germany

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University of Groningen
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Faculty / Assistant & Associate Professor

Netherlands

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University of Oxford
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Postdoctoral researcher

United Kingdom of Great Britain and Northern Ireland

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Ludwig-Maximilians-Universität München
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Postdoctoral researcher

Germany

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Education

Ludwig-Maximilians-Universitat Munchen
Germany

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Dr. rer. nat

TU Braunschweig
Germany

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Dipl.-Chem.

Publications

Modular Design and Scaffold-Synthesis of Multi-Functional Fluorophores for Targeted Cellular Imaging and Pyroptosis

Summary

preprint

Determination of Absolute Intramolecular Distances in Proteins by Anomalous X-ray Scattering Interferometry

Summary

preprint

Rapid and specific detection of single nanoparticles and viruses in microfluidic laminar flow via confocal fluorescence microscopy

Summary

preprint

Labelizer: systematic selection of protein residues for covalent fluorophore labeling

Summary

preprint

Single-molecule detection and super-resolution imaging with a portable and adaptable 3D-printed microscopy platform (Brick-MIC)

Summary

preprint

N-Methyl deuterated rhodamines for protein labelling in sensitive fluorescence microscopy

Published by

Chemical Science

Summary

journal-article

Molecular structure, DNA binding mode, photophysical properties and recommendations for use of SYBR Gold

Published by

Nucleic Acids Research

Summary

journal-article

Multi-parameter photon-by-photon hidden Markov modeling

Summary

preprint

FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices

Published by

eLife

Summary

journal-article

Single‐molecule studies of conformational states and dynamics in the ABC importer OpuA

Published by

FEBS Letters

Summary

journal-article

Structural and biophysical characterization of the tandem substrate-binding domains of the ABC importer GlnPQ

Published by

Open Biology

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journal-article

Structural and biophysical characterization of the tandem substrate-binding domains of the ABC importer GlnPQ

Published by

Open Biology

Summary

journal-article

Molecular and Spectroscopic Characterization of Green and Red Cyanine Fluorophores from the Alexa Fluor and AF Series

Published by

ChemPhysChem

Summary

journal-article

Molecular and Spectroscopic Characterization of Green and Red Cyanine Fluorophores from the Alexa Fluor and AF Series**

Published by

ChemPhysChem

Summary

journal-article

Molecular and Spectroscopic Characterization of Green and Red Cyanine Fluorophores from the Alexa Fluor and AF Series

Published by

ChemPhysChem

Summary

journal-article

Front Cover: Characterization of Fluorescent Proteins with Intramolecular Photostabilization**

Published by

ChemBioChem

Summary

journal-article

Characterization of Fluorescent Proteins with Intramolecular Photostabilization**

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ChemBioChem

Summary

journal-article

Characterization of Fluorescent Proteins with Intramolecular Photostabilization**

Published by

ChemBioChem

Summary

journal-article

Front Cover: Molecular and Spectroscopic Characterization of Green and Red Cyanine Fluorophores from the Alexa Fluor and AF Series (15/2021)

Published by

ChemPhysChem

Summary

journal-article

Cross-validation of distance measurements in proteins by PELDOR/DEER and single-molecule FRET

Summary

preprint

Structural and biophysical characterization of the tandem substrate-binding domains of the ABC importer GlnPQ

Summary

preprint

Triggering closure of a sialic acid TRAP transporter substrate binding protein through binding of natural or artificial substrates

Summary

preprint

Molecular and spectroscopic characterization of green and red cyanine fluorophores from the Alexa Fluor and AF series

Summary

preprint

Single-molecule studies of conformational states and dynamics in the ABC importer OpuA

Summary

preprint

Self-Healing Dyes—Keeping the Promise?

Published by

The Journal of Physical Chemistry Letters

Summary

journal-article

Characterization of fluorescent proteins with intramolecular photostabilization

Summary

preprint

On the impact of competing intra- and intermolecular triplet-state quenching on photobleaching and photoswitching kinetics of organic fluorophores

Published by

Physical Chemistry Chemical Physics

Summary

journal-article

Self-healing dyes for super-resolution fluorescence microscopy

Published by

Journal of Physics D: Applied Physics

Summary

journal-article

ColiCoords: A Python package for the analysis of bacterial fluorescence microscopy data

Summary

other

ColiCoords: A Python package for the analysis of bacterial fluorescence microscopy data

Published by

PLOS ONE

Summary

journal-article

ColiCoords: A Python package for the analysis of bacterial fluorescence microscopy data

Published by

PLOS ONE

Summary

journal-article

Conformational and dynamic plasticity in substrate-binding proteins underlies selective transport in ABC importers

Published by

eLife

Summary

journal-article

Single-molecule observation of ligand binding and conformational changes in FeuA

Summary

other

Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study

Published by

Nature Methods

Summary

journal-article

Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer

Published by

Science

Summary

journal-article

Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer

Published by

Science

Summary

journal-article

Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer

Published by

Science

Summary

journal-article

Conformational dynamics of the ABC transporter McjD seen by single-molecule FRET

Published by

EMBO J

Summary

journal-article

Conformational dynamics of the ABC transporter McjD seen by single‐molecule FRET

Published by

The EMBO Journal

Summary

journal-article

Conformational dynamics of the ABC transporter McjD seen by single-molecule FRET

Published by

The EMBO Journal

Summary

journal-article

On the impact of competing intra- and intermolecular triplet-state quenching on photobleaching and photoswitching kinetics of organic fluorophores

Published by

Phys Chem Chem Phys

Summary

journal-article

On the impact of competing intra- and intermolecular triplet-state quenching on photobleaching and photoswitching kinetics of organic fluorophores

Published by

Physical Chemistry Chemical Physics

Summary

journal-article

Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study

Published by

Nat Methods

Summary

journal-article

Caging and Photoactivation in Single-Molecule Förster Resonance Energy Transfer Experiments

Published by

Biochemistry

Summary

journal-article

Caging and Photoactivation in Single-Molecule Förster Resonance Energy Transfer Experiments

Published by

Biochemistry

Summary

journal-article

Caging and Photoactivation in Single-Molecule Förster Resonance Energy Transfer Experiments

Published by

Biochemistry

Summary

journal-article

A Quantitative Theoretical Framework For Protein-Induced Fluorescence Enhancement-Forster-Type Resonance Energy Transfer (PIFE-FRET)

Published by

Journal of Physical Chemistry B

Summary

journal-article

A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization

Published by

Nature Communications

Summary

journal-article

Forster resonance energy transfer and protein-induced fluorescence enhancement as synergetic multiscale molecular rulers

Published by

Scientific Reports

Summary

journal-article

Light-Switchable Peptides with a Hemithioindigo Unit: Peptide Design, Photochromism, and Optical Spectroscopy

Published by

Chemphyschem

Summary

journal-article

Conformational dynamics in substrate-binding domains influences transport in the ABC importer GlnPQ

Published by

Nature Structural & Molecular Biology

Summary

journal-article

Intramolecular photostabilization via triplet-state quenching: design principles to make organic fluorophores "self-healing"

Published by

Faraday Discussions

Summary

journal-article

Plasmonics, Tracking and Manipulating, and Living Cells: general discussion

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Faraday Discussions

Summary

journal-article

Quantum optics, molecular spectroscopy and low-temperature spectroscopy: general discussion

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Faraday Discussions

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journal-article

Superresolution techniques, biophysics with nanostructures, and fluorescence energy transfer: general discussion

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Faraday Discussions

Summary

journal-article

The 2015 super-resolution microscopy roadmap

Published by

Journal of Physics D-Applied Physics

Summary

journal-article

Watching conformational dynamics of ABC transporters with single-molecule tools

Published by

Biochemical Society Transactions

Summary

journal-article

Alternating-laser excitation: single-molecule FRET and beyond

Published by

Chemical Society Reviews

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journal-article

Selective functionalization of patterned glass surfaces

Published by

Journal of Materials Chemistry B

Summary

journal-article

The Power of Two: Covalent Coupling of Photostabilizers for Fluorescence Applications

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Journal of Physical Chemistry Letters

Summary

journal-article

Mechanism of Intramolecular Photostabilization in Self-Healing Cyanine Fluorophores

Published by

Chemphyschem

Summary

journal-article

Opportunities and challenges in single-molecule and single-particle fluorescence microscopy for mechanistic studies of chemical reactions

Published by

Nature Chemistry

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journal-article

The Transcription Bubble of the RNA Polymerase-Promoter Open Complex Exhibits Conformational Heterogeneity and Millisecond-Scale Dynamics: Implications for Transcription Start-Site Selection

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Journal of Molecular Biology

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journal-article

The photochemical ring opening reaction of chromene as seen by transient absorption and fluorescence spectroscopy

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Photochemical & Photobiological Sciences

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journal-article

'Self-healing' dyes: intramolecular stabilization of organic fluorophores

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Nature Methods

Summary

journal-article

Light-Switchable Hemithioindigo-Hemistilbene-Containing Peptides: Ultrafast Spectroscopy of the Z -> E Isomerization of the Chromophore and the Structural Dynamics of the Peptide Moiety

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Journal of Physical Chemistry B

Summary

journal-article

Linking Single-Molecule Blinking to Chromophore Structure and Redox Potentials

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Chemphyschem

Summary

journal-article

Selective Functionalization of Tailored Nanostructures

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Acs Nano

Summary

journal-article

Folding and Unfolding of Light-Triggered beta-Hairpin Model Peptides

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Journal of Physical Chemistry B

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journal-article

Mechanisms and advancement of antifading agents for fluorescence microscopy and single-molecule spectroscopy

Published by

Physical Chemistry Chemical Physics

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journal-article

Intrinsically Resolution Enhancing Probes for Confocal Microscopy

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Nano Letters

Summary

journal-article

Make them Blink: Probes for Super-Resolution Microscopy

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Chemphyschem

Summary

journal-article

Molecular Driving Forces for Z/E Isomerization Mediated by Heteroatoms: The Example Hemithioindigo

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Journal of Physical Chemistry a

Summary

journal-article

Resolving Single-Molecule Assembled Patterns with Superresolution Blink-Microscopy

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Nano Letters

Summary

journal-article

Sensing DNA Opening in Transcription Using Quenchable Forster Resonance Energy Transfer

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Biochemistry

Summary

journal-article

Single-Molecule Redox Blinking of Perylene Diimide Derivatives in Water

Published by

Journal of the American Chemical Society

Summary

journal-article

Controlling the fluorescence of ordinary oxazine dyes for single-molecule switching and superresolution microscopy

Published by

Proceedings of the National Academy of Sciences of the United States of America

Summary

journal-article

Excitation wavelength dependent pump-probe signatures of molecular crystals

Published by

Applied Physics a-Materials Science & Processing

Summary

journal-article

On the Mechanism of Trolox as Antiblinking and Antibleaching Reagent

Published by

Journal of the American Chemical Society

Summary

journal-article

Photochromic Bis(thiophen-3-yl)maleimides Studied with Time-Resolved Spectroscopy

Published by

Journal of Physical Chemistry a

Summary

journal-article

Single-molecule photophysics of oxazines on DNA and its application in a FRET switch

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Photochemical & Photobiological Sciences

Summary

journal-article

Synthesis of novel photochromic pyrans via palladium-mediated reactions

Published by

Beilstein Journal of Organic Chemistry

Summary

journal-article

The complex photo-rearrangement of a heterocyclic N-oxide: Kinetics from picoseconds to minutes

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Journal of Photochemistry and Photobiology a-Chemistry

Summary

journal-article

Ultrafast Hemithioindigo-based peptide-switches

Published by

Chemical Physics

Summary

journal-article

Wavelength and solvent independent photochemistry: the electrocyclic ring-closure of indolylfulgides

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Photochemical & Photobiological Sciences

Summary

journal-article

Accelerated and Efficient Photochemistry from Higher Excited Electronic States in Fulgide Molecules

Published by

Journal of Physical Chemistry a

Summary

journal-article

Chemical control of Hemithioindigo-photoisomerization - Substituent-effects on different molecular parts

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Chemical Physics Letters

Summary

journal-article

The Hammett relationship and reactions in the excited electronic state: Hemithioindigo Z/E-photoisomerization

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Journal of Physical Chemistry a

Summary

journal-article

Light-triggered beta-hairpin folding and unfolding

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Proceedings of the National Academy of Sciences of the United States of America

Summary

journal-article

Photochemical Z -> E isomerization of a hemithioindigo/hemistilbene omega-amino acid

Published by

Chemphyschem

Summary

journal-article

Slower processes of the ultrafast photo-isomerization of an azobenzene observed by IR spectroscopy

Published by

Chemical Physics

Summary

journal-article

Hemithioindigo-based photoswitches as ultrafast light trigger in chromopeptides

Published by

Chemical Physics Letters

Summary

journal-article

Micro-structured electrode arrays: high-frequency discharges at atmospheric pressure - characterization and new applications

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Vacuum

Summary

journal-article

Thorben Cordes